head	1.3;
access;
symbols
	RELEASE_4_9_0:1.2
	RELEASE_5_1_0:1.2
	RELEASE_4_8_0:1.2
	RELEASE_5_0_0:1.1
	RELEASE_4_7_0:1.1
	RELEASE_4_6_2:1.1
	RELEASE_4_6_1:1.1
	RELEASE_4_6_0:1.1
	RELEASE_5_0_DP1:1.1;
locks; strict;
comment	@# @;


1.3
date	2003.11.13.14.44.58;	author trevor;	state Exp;
branches;
next	1.2;

1.2
date	2003.03.07.05.56.43;	author ade;	state Exp;
branches;
next	1.1;

1.1
date	2002.01.25.14.58.14;	author wjv;	state Exp;
branches;
next	;


desc
@@


1.3
log
@Use the FIND and XARGS macros introduced in bsd.port.mk 1.391.
@
text
@# New ports collection makefile for:	t_coffee
# Date created:		27 June 2001
# Whom:	      		Johann Visagie <wjv@@FreeBSD.org>
#
# $FreeBSD$
#

PORTNAME=	t_coffee
PORTVERSION=	1.37
CATEGORIES=	biology
MASTER_SITES=	http://igs-server.cnrs-mrs.fr/~cnotred/Packages/
DISTNAME=	T-COFFEE_distribution

MAINTAINER=	wjv@@FreeBSD.org
COMMENT=	A multiple DNA or protein sequence alignment package

BUILD_DEPENDS=	clustalw:${PORTSDIR}/biology/clustalw
RUN_DEPENDS=	${BUILD_DEPENDS}

WRKSRC=		${WRKDIR}/${DISTNAME}_Version_${PORTVERSION}
BUILD_WRKSRC=	${WRKSRC}/t_coffee_source
MAKE_ENV=	MV=${MV} USER_BIN=${LOCALBASE}/bin \
	  	CLUSTALW_4_TCOFFEE=${LOCALBASE}/bin/clustalw
MAKEFILE=	makefile
PKGMESSAGE=	${WRKDIR}/pkg-message

post-build:
	@@ cd ${WRKSRC}/lalign && ${SETENV} ${MAKE_ENV} ${MAKE} \
	  ${MAKE_FLAGS} ${MAKEFILE} ${MAKE_ARGS} ${ALL_TARGET}

.include <bsd.port.pre.mk>

do-install:
.for binfile in t_coffee_source/t_coffee lalign/lalign2list
	@@ ${INSTALL_PROGRAM} ${WRKSRC}/${binfile} ${PREFIX}/bin
.endfor
.for scriptfile in extract_from_pdb mocca
	@@ ${INSTALL_SCRIPT} ${WRKSRC}/bin/${scriptfile} ${PREFIX}/bin
.endfor

post-install:
	@@ ${MKDIR} ${DATADIR}
	@@ ${INSTALL_DATA} ${WRKSRC}/html/* ${DATADIR}
.if !defined(NOPORTDOCS)
	@@ ${MKDIR} ${DOCSDIR}
	@@ ${INSTALL_DATA} ${WRKSRC}/doc/* ${DOCSDIR}
	@@ ${MKDIR} ${EXAMPLESDIR}
	@@ ${RMDIR} ${WRKSRC}/example/aln 2>/dev/null || ${TRUE}
	@@ cd ${WRKSRC}/example && ${FIND} * \
	  | cpio --quiet -pdum -R ${SHAREOWN}:${SHAREGRP} ${EXAMPLESDIR}
	@@ ${SED} -e 's#%%DATADIR%%#${DATADIR}#' ${.CURDIR}/pkg-message \
	  > ${PKGMESSAGE}
.if !defined(BATCH)
	@@ ${CAT} ${PKGMESSAGE}
.endif
.endif
.include <bsd.port.post.mk>
@


1.2
log
@Clear moonlight beckons.
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
@
text
@d49 1
a49 1
	@@ cd ${WRKSRC}/example && find * \
@


1.1
log
@Add t_coffee 1.37, a multiple DNA or protein sequence alignment package.
@
text
@d15 1
@